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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kp3 ATP Argininosuccinate synthase 6.3.4.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kp3 ATPArgininosuccinate synthase 6.3.4.5 1.007
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.801
1kh2 ATPArgininosuccinate synthase / 0.724
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.718
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.710
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.710
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.709
1j1z ATPArgininosuccinate synthase / 0.705
1mxi SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.690
1j21 ATPArgininosuccinate synthase / 0.689
1kor ANPArgininosuccinate synthase / 0.679
1kh3 ANPArgininosuccinate synthase / 0.675
2el3 SAHDiphthine synthase / 0.672
5ahw CMPUniversal stress protein family protein, putative / 0.667
2cx8 SAHRibosomal RNA small subunit methyltransferase E / 0.664
2eld SAHDiphthine synthase / 0.659
2emr SAHDiphthine synthase / 0.659
2e08 SAHDiphthine synthase / 0.658
2p6i SAHDiphthine synthase / 0.658
2z08 ATPUniversal stress protein family / 0.658
2ejz SAHDiphthine synthase / 0.656
2p6k SAHDiphthine synthase / 0.656
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.656
2e8s SAHDiphthine synthase / 0.654
2ek4 SAHDiphthine synthase / 0.654
2ek7 SAHDiphthine synthase / 0.654
2nv4 SAMS-adenosyl-L-methionine-binding protein AF_0241 / 0.653
2pcm SAHDiphthine synthase / 0.653
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.652
2npn SAMPutative cobalamin synthesis related protein / 0.650