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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kh3 ANP Argininosuccinate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kh3 ANPArgininosuccinate synthase / 1.116
1j21 ATPArgininosuccinate synthase / 0.783
1kh2 ATPArgininosuccinate synthase / 0.773
1j1z ATPArgininosuccinate synthase / 0.768
4xfj ANPArgininosuccinate synthase / 0.722
1kor ANPArgininosuccinate synthase / 0.710
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.686
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.683
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.681
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.681
3tw6 ADPPyruvate carboxylase / 0.678
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.675
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.675
2npn SAMPutative cobalamin synthesis related protein / 0.675
2emu SAHDiphthine synthase / 0.673
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.673
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.672
1mxi SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.671
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.671
1w2d ADPInositol-trisphosphate 3-kinase A 2.7.1.127 0.671
2z08 ATPUniversal stress protein family / 0.671
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.669
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.669
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.667
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.665
2e07 SAHDiphthine synthase / 0.661
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.659
3n4k SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.659
4xlv ACPInsulin receptor 2.7.10.1 0.659
2dsh SAHDiphthine synthase / 0.658
2eeq SAHDiphthine synthase / 0.658
2ek7 SAHDiphthine synthase / 0.657
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.655
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.652
1ruo CMPcAMP-activated global transcriptional regulator CRP / 0.650
2el0 SAHDiphthine synthase / 0.650