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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kbi FMN Cytochrome b2, mitochondrial 1.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 1.312
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 1.189
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 1.184
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 1.145
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 1.012
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.937
2zfa FMNLactate oxidase / 0.921
4yl2 FMNLactate oxidase / 0.912
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.908
2j6x FMNLactate oxidase / 0.907
2nli FMNLactate oxidase / 0.895
2du2 FMNLactate oxidase / 0.866
5ebu FMNLactate oxidase / 0.860
2e77 FMNLactate oxidase / 0.840
4rje FNRLactate oxidase / 0.833
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.807
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.805
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.797
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.784
2h8x FMNXenA / 0.784
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.779
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.773
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.771
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.769
1vhn FMNtRNA-dihydrouridine synthase / 0.763
1z44 FMNNADPH dehydrogenase / 0.762
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.762
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.757
4tmb FMNOld yellow enzyme / 0.753
3l67 FMNXenobiotic reductase / 0.750
1z48 FMNNADPH dehydrogenase / 0.749
3aty FMNProstaglandin F2a synthase / 0.746
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.744
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.744
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.740
3n14 FMNXenobiotic reductase / 0.740
4e2b FMNDehydrogenase / 0.738
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.737
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.736
4cw5 FMNDfnA / 0.734
4e2d FMNDehydrogenase / 0.734
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.729
3atz FMNProstaglandin F2a synthase / 0.726
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.724
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.724
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.720
4uth FMNXenobiotic reductase / 0.720
4utm FNRXenobiotic reductase / 0.720
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.714
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.714
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.713
1z41 FMNNADPH dehydrogenase / 0.711
3gka FMNN-ethylmaleimide reductase / 0.710
3hf3 FMNChromate reductase / 0.707
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.706
3l5l FMNXenobiotic reductase / 0.704
3n19 FNRXenobiotic reductase / 0.702
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.701
4utk FNRXenobiotic reductase / 0.693
3p84 FMNPentaerythritol tetranitrate reductase / 0.690
4jic FMNGTN Reductase / 0.690
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.689
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.685
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.681
3p8i FMNPentaerythritol tetranitrate reductase / 0.681
4qly FMNEnone reductase CLA-ER / 0.680
3mkh FADNitroalkane oxidase / 0.678
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.675
4utl FNRXenobiotic reductase / 0.675
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.674
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.673
2gjl FMNNitronate monooxygenase 1.13.12.16 0.673
3gr8 FMNNADPH dehydrogenase / 0.672
3hji FADVivid PAS protein VVD / 0.671
1q1w FADPutidaredoxin reductase 1.18.1.5 0.669
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.668
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.668
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.666
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.664
3cgb FADCoenzyme A disulfide reductase / 0.663
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.661
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.660
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.659
2z6i FMN2-nitropropane dioxygenase / 0.656
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.656
4tmc FMNOld yellow enzyme / 0.654
4z38 FMNMlnA / 0.654
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.652
3ept FDAPutative FAD-monooxygenase / 0.652
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.650
4kuk RBFPutative blue-light photoreceptor / 0.650