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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k6v XN2 Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1k6v XN2Gag-Pol polyprotein 3.4.23.16 1.304
1k6c MK1Gag-Pol polyprotein 3.4.23.16 1.044
1k6p XN3Gag-Pol polyprotein 3.4.23.16 1.038
1hsg MK1Gag-Pol polyprotein / 1.035
1k6t XN1Gag-Pol polyprotein 3.4.23.16 0.971
2avv MK1Gag-Pol polyprotein 3.4.23.16 0.946
2bpx MK1Gag-Pol polyprotein 3.4.23.16 0.901
1c70 L75Protease / 0.874
2bpv 1INGag-Pol polyprotein 3.4.23.16 0.859
1w5w BE4Gag-Pol polyprotein 3.4.23.16 0.851
1sdv MK1Gag-Pol polyprotein 3.4.23.16 0.834
2bpw 1INGag-Pol polyprotein 3.4.23.16 0.824
1sdt MK1Gag-Pol polyprotein 3.4.23.16 0.808
2uy0 HV1Gag-Pol polyprotein 3.4.23.16 0.801
2bqv A1AProtease / 0.791
3el5 1UNGag-Pol polyprotein / 0.790
1d4j MSCGag-Pol polyprotein 3.4.23.16 0.782
1wbk 568Pol protein / 0.778
2bpz 3INGag-Pol polyprotein 3.4.23.16 0.755
1ec0 BEDGag-Pol polyprotein 3.4.23.16 0.750
1w5y BE6Gag-Pol polyprotein 3.4.23.16 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1hpx KNIGag-Pol polyprotein / 0.732
1izi Q50Gag-Pol polyprotein 3.4.23.16 0.726
1ebz BECGag-Pol polyprotein 3.4.23.16 0.721
2bpy 3INGag-Pol polyprotein 3.4.23.16 0.716
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.713
1w5x BE5Gag-Pol polyprotein 3.4.23.16 0.711
1hsh MK1Gag-Pol polyprotein / 0.710
2r5q 1UNGag-Pol polyprotein / 0.707
1w5v BE3Gag-Pol polyprotein 3.4.23.16 0.706
2qak 1UNGag-Pol polyprotein 3.4.23.16 0.704
1eby BEBGag-Pol polyprotein 3.4.23.16 0.695
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.693
3s85 LK0Gag-Pol polyprotein / 0.690
1c6x 3INProtease / 0.687
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.687
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.680
2qnq QN3Gag-Pol polyprotein 3.4.23.16 0.678
1c6z ROCProtease / 0.677
3wsj MK1Protease / 0.677
1izh Q50Protease / 0.676
1mtr PI6Gag-Pol polyprotein 3.4.23.16 0.676
2f3k RO1Protease / 0.676
1a9m U0EGag-Pol polyprotein / 0.671
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.671
1b6l PI4Gag-Pol polyprotein 3.4.23.16 0.669
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.669
3dck KVIProtease / 0.667
3oxc ROCProtease / 0.667
1ec2 BEJGag-Pol polyprotein 3.4.23.16 0.666
3sab F78Protease / 0.665
1t7j 478Gag-Pol polyprotein 3.4.23.16 0.663
2q64 1UNGag-Pol polyprotein 3.4.23.16 0.661
1dif A85Gag-Pol polyprotein / 0.660
2qhc AB1Protease / 0.659
1a94 0Q4Gag-Pol polyprotein 3.4.23.16 0.658
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.658
1hpv 478Gag-Pol polyprotein / 0.658
3lit E15Protease / 0.658
4dfg 0JVGag-Pol polyprotein 3.4.23.16 0.658
1fff 0Q4Gag-Pol polyprotein 3.4.23.16 0.655
3bvb 017Gag-Pol polyprotein 3.4.23.16 0.655
4hdf G52Gag-Pol polyprotein 3.4.23.16 0.653
4q1w 017Gag-Pol polyprotein 3.4.23.16 0.652
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.651
3nu4 478Gag-Pol polyprotein 3.4.23.16 0.651
2r5p MK1Gag-Pol polyprotein / 0.650
3bxr DRRGag-Pol polyprotein 3.4.23.16 0.650
3hzc 2NCProtease / 0.650
3tl9 ROCGag-Pol polyprotein 3.4.23.16 0.650