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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k2u H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.918
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.911
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.910
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.909
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.907
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.907
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.906
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.906
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.906
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.904
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.903
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.903
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.902
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.902
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.901
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.901
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.900
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.899
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.894
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.894
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.892
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.892
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.892
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.892
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.891
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.891
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.891
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.891
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.891
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.891
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.890
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.890
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.890
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.890
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.890
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.890
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.889
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.889
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.889
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.889
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.889
3png H4BNitric oxide synthase, brain 1.14.13.39 0.889
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.888
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.887
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.887
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.886
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.885
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.884
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.884
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.883
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.882
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.882
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.880
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.880
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.877
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.877
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.875
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.874
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.873
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.872
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.871
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.871
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.870
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.869
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.868
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.867
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.866
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.866
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.865
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.863
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.861
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.860
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.860
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.857
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.857
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.854
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.854
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.853
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.851
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.847
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.847
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.844
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.842
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.836
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.831
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.830
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.829
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.823
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.822
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.819
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.813
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.809
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.809
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.807
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.773
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.773
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.761
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.760
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.757
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.744
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.743
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.731
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.724
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.721
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.719
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.715
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.707
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.703
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.703
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.694
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.685
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.672
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.662
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.659
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.658
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.657