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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jkx 138 Phosphoribosylglycinamide formyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jkx 138Phosphoribosylglycinamide formyltransferase / 1.214
1men GARTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.744
1gar U89Phosphoribosylglycinamide formyltransferase / 0.694
1c3e GARPhosphoribosylglycinamide formyltransferase / 0.690
1rbq KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.663
1rby KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.658
1gir NDPIota toxin component Ia / 0.655
3k13 THH5-methyltetrahydrofolate-homocysteine methyltransferase / 0.654