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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1itz TPP Transketolase, chloroplastic 2.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1itz TPPTransketolase, chloroplastic 2.2.1.1 1.231
3upt TPPTransketolase / 1.097
1gpu THDTransketolase 1 2.2.1.1 1.029
2r8o T5XTransketolase 1 / 1.017
1ngs TPPTransketolase 1 2.2.1.1 0.964
1trk TPPTransketolase 1 2.2.1.1 0.951
2r5n TPPTransketolase 1 / 0.930
2r8p T6FTransketolase 1 / 0.927
3m7i TPPTransketolase / 0.927
3rim TPPTransketolase 2.2.1.1 0.893
3m6l TPPTransketolase / 0.859
3m34 TPPTransketolase / 0.842
1ay0 TPPTransketolase 1 2.2.1.1 0.827
1tkb N1TTransketolase 1 2.2.1.1 0.820
3dv0 TPWPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.818
3dv0 TPWPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.818
1tkc M6TTransketolase 1 2.2.1.1 0.813
2j9f THV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial 1.2.4.4 0.805
2j9f THV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial 1.2.4.4 0.805
1ols TDP2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial 1.2.4.4 0.791
1w88 TDPPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.786
1w88 TDPPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.786
1tka N3TTransketolase 1 2.2.1.1 0.780
4k9o TPPBenzoylformate decarboxylase 4.1.1.7 0.766
4c7x TPPTransketolase / 0.765
4mzx TZDBenzoylformate decarboxylase 4.1.1.7 0.757
4k9n TZDBenzoylformate decarboxylase 4.1.1.7 0.751
5ej9 TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.751
2q5o TPWIndole-3-pyruvate decarboxylase 4.1.1.74 0.750
4mpp TZDBenzoylformate decarboxylase 4.1.1.7 0.747
2jlc TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.746
2jla TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.744
1umc TDP2-oxoisovalerate dehydrogenase subunit alpha 1.2.4.4 0.739
1umc TDP2-oxoisovalerate dehydrogenase subunit beta 1.2.4.4 0.739
1jsc TPPAcetolactate synthase catalytic subunit, mitochondrial 2.2.1.6 0.738
2g28 TDKPyruvate dehydrogenase E1 component 1.2.4.1 0.737
5eja TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.737
4k9p TPPBenzoylformate decarboxylase 4.1.1.7 0.736
1rp7 TZDPyruvate dehydrogenase E1 component 1.2.4.1 0.733
3fzn D7KBenzoylformate decarboxylase 4.1.1.7 0.732
4mpr TPPBenzoylformate decarboxylase 4.1.1.7 0.732
1mcz TDPBenzoylformate decarboxylase 4.1.1.7 0.731
4jub TPPBenzoylformate decarboxylase 4.1.1.7 0.731
3lq2 TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.727
4juf TPPBenzoylformate decarboxylase 4.1.1.7 0.727
5dgt TZDBenzoylformate decarboxylase 4.1.1.7 0.726
1l8a TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.724
2fwn TDPBenzoylformate decarboxylase 4.1.1.7 0.724
3exf TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial 1.2.4.1 0.724
3exf TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial 1.2.4.1 0.724
3zhu TD8Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.722
1ni4 TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial 1.2.4.1 0.721
1ni4 TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial 1.2.4.1 0.721
3ahe THDProbable phosphoketolase / 0.721
3ahj TPPProbable phosphoketolase / 0.721
3ey9 TDPPyruvate dehydrogenase [ubiquinone] 1.2.5.1 0.718
3zhs TD6Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.718
5ahk TPPAcetolactate synthase II, large subunit / 0.717
3zht TD9Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.714
4juc TPPBenzoylformate decarboxylase 4.1.1.7 0.714
2q5q TPWIndole-3-pyruvate decarboxylase 4.1.1.74 0.712
4gm4 TZDBenzoylformate decarboxylase 4.1.1.7 0.712
5ej8 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.712
3dva TPWPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.709
3dva TPWPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.709
3exh TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial 1.2.4.1 0.709
3exh TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial 1.2.4.1 0.709
4qel TZDBenzoylformate decarboxylase 4.1.1.7 0.709
2x7j TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.707
3zhv TDWMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.706
2ihu TP9N(2)-(2-carboxyethyl)arginine synthase / 0.705
3ahi HTLProbable phosphoketolase / 0.705
2v3w TPPBenzoylformate decarboxylase 4.1.1.7 0.704
2o1s TDP1-deoxy-D-xylulose-5-phosphate synthase 2.2.1.7 0.703
1bfd TPPBenzoylformate decarboxylase 4.1.1.7 0.699
1y9d TPPPyruvate oxidase 1.2.3.3 0.699
4ju8 TZDBenzoylformate decarboxylase 4.1.1.7 0.698
4zp1 TPPPyruvate decarboxylase 4.1.1.1 0.698
2g25 TDKPyruvate dehydrogenase E1 component 1.2.4.1 0.697
3zhq TPPMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.697
1upb TPPN(2)-(2-carboxyethyl)arginine synthase / 0.696
4ju9 TZDBenzoylformate decarboxylase 4.1.1.7 0.693
5eso TDP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.693
3lq4 TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.692
5ej4 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.692
3zhr TPPMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.691
1ovm TPPIndole-3-pyruvate decarboxylase 4.1.1.74 0.690
2vk4 TPPPyruvate decarboxylase 4.1.1.1 0.690
2vk8 TPPPyruvate decarboxylase isozyme 1 / 0.690
5esd TDP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.690
1po7 TZDBenzoylformate decarboxylase 4.1.1.7 0.689
4mq5 TPPBenzoylformate decarboxylase 4.1.1.7 0.689
3fsj D7KBenzoylformate decarboxylase 4.1.1.7 0.683
4gm1 TZDBenzoylformate decarboxylase 4.1.1.7 0.680
1pow TPPPyruvate oxidase 1.2.3.3 0.679
4cok TPPPyruvate decarboxylase / 0.679
1qpb TPPPyruvate decarboxylase isozyme 1 / 0.678
2jib TPPOxalyl-CoA decarboxylase 4.1.1.8 0.678
2iht TPPN(2)-(2-carboxyethyl)arginine synthase / 0.676
2iea TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.674
5ej6 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.673
2ji6 TPWOxalyl-CoA decarboxylase 4.1.1.8 0.671
3hwx TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.671
1pox TPPPyruvate oxidase 1.2.3.3 0.670
5ej7 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.669
2o1x TDP1-deoxy-D-xylulose-5-phosphate synthase 2.2.1.7 0.668
2qta TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.668
4gm0 TZDBenzoylformate decarboxylase 4.1.1.7 0.664
2w93 TPPPyruvate decarboxylase isozyme 1 / 0.661
5ej5 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.660
2ag0 TPPBenzaldehyde lyase / 0.659
2ezt TDMPyruvate oxidase 1.2.3.3 0.659
3eya TDPPyruvate dehydrogenase [ubiquinone] 1.2.5.1 0.659
3oe1 TDLPyruvate decarboxylase 4.1.1.1 0.658
2ji9 TPWOxalyl-CoA decarboxylase 4.1.1.8 0.656
2pda TPPPyruvate synthase / 0.656
1pyd TDPPyruvate decarboxylase isozyme 1 / 0.655
4gg1 TZDBenzoylformate decarboxylase 4.1.1.7 0.655
5c4i TPPOxalate oxidoreductase subunit alpha / 0.655
5c4i TPPOxalate oxidoreductase subunit beta / 0.655
4mkg AP5Adenylate kinase / 0.654