1.750 Å
X-ray
2010-03-16
| Name: | Transketolase |
|---|---|
| ID: | Q0P7Y3_CAMJE |
| AC: | Q0P7Y3 |
| Organism: | Campylobacter jejuni subsp. jejuni serotype O:2 |
| Reign: | Bacteria |
| TaxID: | 192222 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 27.200 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.593 | 317.250 |
| % Hydrophobic | % Polar |
|---|---|
| 62.77 | 37.23 |
| According to VolSite | |

| HET Code: | TPP |
|---|---|
| Formula: | C12H16N4O7P2S |
| Molecular weight: | 422.291 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 51.99 % |
| Polar Surface area: | 225.32 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -3.1705 | -7.27627 | 45.4175 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3A | NE2 | HIS- 67 | 3.32 | 124.98 | H-Bond (Protein Donor) |
| O1B | NE2 | HIS- 67 | 2.93 | 150.24 | H-Bond (Protein Donor) |
| N4' | O | GLY- 114 | 2.9 | 170.8 | H-Bond (Ligand Donor) |
| CM2 | CB | LEU- 116 | 4.02 | 0 | Hydrophobic |
| C5' | CD1 | LEU- 116 | 3.72 | 0 | Hydrophobic |
| S1 | CD1 | LEU- 116 | 4.18 | 0 | Hydrophobic |
| CM4 | CD1 | LEU- 116 | 3.84 | 0 | Hydrophobic |
| C6 | CD1 | LEU- 116 | 4.12 | 0 | Hydrophobic |
| N3' | N | LEU- 116 | 3.04 | 174.33 | H-Bond (Protein Donor) |
| O1A | N | GLY- 153 | 2.92 | 156.3 | H-Bond (Protein Donor) |
| O2B | ND2 | ASN- 182 | 2.76 | 153.45 | H-Bond (Protein Donor) |
| S1 | CD1 | ILE- 186 | 4.44 | 0 | Hydrophobic |
| CM4 | CD1 | ILE- 186 | 3.98 | 0 | Hydrophobic |
| C6 | CG1 | ILE- 186 | 4.08 | 0 | Hydrophobic |
| O1B | ND1 | HIS- 256 | 3.19 | 149.5 | H-Bond (Protein Donor) |
| O3B | ND1 | HIS- 256 | 3.05 | 136.02 | H-Bond (Protein Donor) |
| O1B | O | HOH- 829 | 2.78 | 179.98 | H-Bond (Protein Donor) |
| O2A | MG | MG- 901 | 2.18 | 0 | Metal Acceptor |
| O2B | MG | MG- 901 | 2.24 | 0 | Metal Acceptor |