1.750 Å
X-ray
2010-03-16
Name: | Transketolase |
---|---|
ID: | Q0P7Y3_CAMJE |
AC: | Q0P7Y3 |
Organism: | Campylobacter jejuni subsp. jejuni serotype O:2 |
Reign: | Bacteria |
TaxID: | 192222 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.200 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.593 | 317.250 |
% Hydrophobic | % Polar |
---|---|
62.77 | 37.23 |
According to VolSite |
HET Code: | TPP |
---|---|
Formula: | C12H16N4O7P2S |
Molecular weight: | 422.291 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.99 % |
Polar Surface area: | 225.32 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-3.1705 | -7.27627 | 45.4175 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3A | NE2 | HIS- 67 | 3.32 | 124.98 | H-Bond (Protein Donor) |
O1B | NE2 | HIS- 67 | 2.93 | 150.24 | H-Bond (Protein Donor) |
N4' | O | GLY- 114 | 2.9 | 170.8 | H-Bond (Ligand Donor) |
CM2 | CB | LEU- 116 | 4.02 | 0 | Hydrophobic |
C5' | CD1 | LEU- 116 | 3.72 | 0 | Hydrophobic |
S1 | CD1 | LEU- 116 | 4.18 | 0 | Hydrophobic |
CM4 | CD1 | LEU- 116 | 3.84 | 0 | Hydrophobic |
C6 | CD1 | LEU- 116 | 4.12 | 0 | Hydrophobic |
N3' | N | LEU- 116 | 3.04 | 174.33 | H-Bond (Protein Donor) |
O1A | N | GLY- 153 | 2.92 | 156.3 | H-Bond (Protein Donor) |
O2B | ND2 | ASN- 182 | 2.76 | 153.45 | H-Bond (Protein Donor) |
S1 | CD1 | ILE- 186 | 4.44 | 0 | Hydrophobic |
CM4 | CD1 | ILE- 186 | 3.98 | 0 | Hydrophobic |
C6 | CG1 | ILE- 186 | 4.08 | 0 | Hydrophobic |
O1B | ND1 | HIS- 256 | 3.19 | 149.5 | H-Bond (Protein Donor) |
O3B | ND1 | HIS- 256 | 3.05 | 136.02 | H-Bond (Protein Donor) |
O1B | O | HOH- 829 | 2.78 | 179.98 | H-Bond (Protein Donor) |
O2A | MG | MG- 901 | 2.18 | 0 | Metal Acceptor |
O2B | MG | MG- 901 | 2.24 | 0 | Metal Acceptor |