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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1iqr FAD Deoxyribodipyrimidine photo-lyase 4.1.99.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.413
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.281
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.230
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.218
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.074
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.064
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.032
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.031
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.998
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.994
1u3d FADCryptochrome-1 / 0.983
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.981
2wq6 FADRE11660p / 0.974
3cvu FADRE11660p / 0.964
2wq7 FADRE11660p / 0.963
4i6g FADCryptochrome-2 / 0.963
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.962
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.961
1u3c FADCryptochrome-1 / 0.958
3cvy FADRE11660p / 0.934
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.921
4dja FAD(6-4) photolyase / 0.920
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.876
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.874
4gu5 FADCryptochrome-1 / 0.848
1np7 FADCryptochrome DASH / 0.828
2wb2 FADRE11660p / 0.825
4cdm FADDeoxyribodipyrimidine photolyase / 0.807
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.797
4jzy FADCryptochrome-1 / 0.774
3pl8 FADPyranose 2-oxidase / 0.684
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.678
1b4v FADCholesterol oxidase 1.1.3.6 0.677
4rek FADCholesterol oxidase 1.1.3.6 0.677
1n4u FAECholesterol oxidase 1.1.3.6 0.676
2gew FADCholesterol oxidase 1.1.3.6 0.676
4u2t FADCholesterol oxidase 1.1.3.6 0.676
4xwr FADCholesterol oxidase 1.1.3.6 0.676
3cnj FADCholesterol oxidase 1.1.3.6 0.675
3gyi FADCholesterol oxidase 1.1.3.6 0.675
4u2s FDACholesterol oxidase 1.1.3.6 0.675
3mzi FMNActivator of photopigment and puc expression / 0.671
1gal FADGlucose oxidase 1.1.3.4 0.670
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.669
3hf3 FMNChromate reductase / 0.667
3vqr FADPutative oxidoreductase / 0.667
1cc2 FADCholesterol oxidase 1.1.3.6 0.666
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.665
2z6i FMN2-nitropropane dioxygenase / 0.664
4eep FMNPhototropin-2 2.7.11.1 0.664
4hj3 FMNLOV protein / 0.664
4m5p FMNNADPH dehydrogenase / 0.663
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.662
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.662
1b8s FADCholesterol oxidase 1.1.3.6 0.661
1z48 FMNNADPH dehydrogenase / 0.661
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.661
1v93 FADMethylenetetrahydrofolate reductase / 0.660
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.660
5cpm FNRNADH:flavin oxidoreductase / 0.659
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.658
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.658
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.658
3ad9 FADSubunit beta of sarcosine oxidase / 0.658
4h4s FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.657
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.657
3qvp FADGlucose oxidase 1.1.3.4 0.657
3qvr FADGlucose oxidase 1.1.3.4 0.657
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.657
1vyr FMNPentaerythritol tetranitrate reductase / 0.656
3p67 FMNPentaerythritol tetranitrate reductase / 0.656
3p84 FMNPentaerythritol tetranitrate reductase / 0.656
3p8j FMNPentaerythritol tetranitrate reductase / 0.656
1tdo FADL-amino-acid oxidase 1.4.3.2 0.655
2abb FMNPentaerythritol tetranitrate reductase / 0.655
3f03 FMNPentaerythritol tetranitrate reductase / 0.655
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.655
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.655
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.654
3n14 FMNXenobiotic reductase / 0.654
3p62 FMNPentaerythritol tetranitrate reductase / 0.654
3cox FADCholesterol oxidase 1.1.3.6 0.652
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.652
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.652
1cbo FADCholesterol oxidase 1.1.3.6 0.651
1nb9 RBFRiboflavin kinase 2.7.1.26 0.651
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.651
3qe2 FMNNADPH--cytochrome P450 reductase / 0.650
4j8p FMNFlavodoxin / 0.650