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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ihx SND Glyceraldehyde-3-phosphate dehydrogenase 1.2.1.12

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ihx SNDGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.927
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.748
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.740
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.729
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.728
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.727
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.726
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.722
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.716
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.713
4o63 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.713
3v1y NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.706
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.706
4z0h NADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic 1.2.1.12 0.706
1dc6 NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.704
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.703
3e5r NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.702
1gae NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.697
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.696
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.694
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.693
1gad NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.690
1cer NADGlyceraldehyde-3-phosphate dehydrogenase / 0.684
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.683
1j0x NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.682
1znq NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.677
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.677
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.676
2ep7 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.669
4boy NADGlyceraldehyde-3-phosphate dehydrogenase / 0.669
2b4r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.668
3zdf NADGlyceraldehyde-3-phosphate dehydrogenase / 0.668
1e3e NAIAlcohol dehydrogenase 4 1.1.1.1 0.666
1ywg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.666
3zcx NADGlyceraldehyde-3-phosphate dehydrogenase / 0.666
4dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.666
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.665
1rm3 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.664
3abi NADUncharacterized protein / 0.663
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.663
3ksd NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.662
4e5i 0N9Polymerase acidic protein / 0.660
1rm4 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.659
1vc2 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.659
4e5f 0N7Polymerase acidic protein / 0.659
1uxk NADMalate dehydrogenase / 0.657
3lvf NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.656
3k2b NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.655
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.654
1nqa NADGlyceraldehyde-3-phosphate dehydrogenase / 0.654
3b1j NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
3doc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.652
1a7k NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.651
3ntq NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.651