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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gtr ATP Glutamine--tRNA ligase 6.1.1.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.945
1qrs ATPGlutamine--tRNA ligase 6.1.1.18 0.856
1qrt ATPGlutamine--tRNA ligase 6.1.1.18 0.818
1qru ATPGlutamine--tRNA ligase 6.1.1.18 0.787
1euy QSIGlutamine--tRNA ligase 6.1.1.18 0.768
4jxx ATPGlutamine--tRNA ligase 6.1.1.18 0.767
4jxz ATPGlutamine--tRNA ligase 6.1.1.18 0.766
1qtq QSIGlutamine--tRNA ligase 6.1.1.18 0.754
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 0.752
2re8 GSUGlutamine--tRNA ligase 6.1.1.18 0.734
4jyz ATPGlutamine--tRNA ligase 6.1.1.18 0.711
3akz GSUGlutamate--tRNA ligase 2 / 0.683
2x3f APCPantothenate synthetase / 0.681
4m69 ANPReceptor-interacting serine/threonine-protein kinase 3 2.7.11.1 0.679
1ad5 ANPTyrosine-protein kinase HCK 2.7.10.2 0.674
3jxe TYMTryptophan--tRNA ligase / 0.666
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.665
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.660
3ag6 PAJPantothenate synthetase / 0.659
1n2i PAJPantothenate synthetase 6.3.2.1 0.652