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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fxo TMP Glucose-1-phosphate thymidylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fxo TMPGlucose-1-phosphate thymidylyltransferase / 0.978
5ify UMPGlucose-1-phosphate thymidylyltransferase / 0.827
1g0r THMGlucose-1-phosphate thymidylyltransferase / 0.811
1g2v TTPGlucose-1-phosphate thymidylyltransferase / 0.792
4ho6 UTPGlucose-1-phosphate thymidylyltransferase / 0.744
1h5t TYDGlucose-1-phosphate thymidylyltransferase 1 / 0.700
4ho4 THMGlucose-1-phosphate thymidylyltransferase / 0.698
5fuv THMThymidine kinase, putative / 0.695
5fuw THMThymidine kinase, putative / 0.689
3adp NAILambda-crystallin 1.1.1.45 0.669
4ho9 UTPGlucose-1-phosphate thymidylyltransferase / 0.668
1xbt TTPThymidine kinase, cytosolic 2.7.1.21 0.663
1e2j THMThymidine kinase / 0.652
2b8t THMThymidine kinase / 0.651
1i3k UPGUDP-glucose 4-epimerase / 0.650