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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fx1 FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fx1 FMNFlavodoxin / 1.113
1j8q FMNFlavodoxin / 0.900
1akr FMNFlavodoxin / 0.877
2fx2 FMNFlavodoxin / 0.876
1akw FMNFlavodoxin / 0.868
1azl FMNFlavodoxin / 0.866
1c7f FMNFlavodoxin / 0.866
1wsb FMNFlavodoxin / 0.856
1aku FMNFlavodoxin / 0.828
1czn FMNFlavodoxin / 0.827
5tgz FMNCannabinoid receptor 1 / 0.827
1ahn FMNFlavodoxin 1 / 0.823
1ofv FMNFlavodoxin / 0.822
1xyv FMNFlavodoxin / 0.819
4fx2 FMNFlavodoxin / 0.813
2v5u FMNFlavodoxin / 0.808
5xra FMNCannabinoid receptor 1 / 0.803
3esz FMNFlavodoxin / 0.786
1xyy FMNFlavodoxin / 0.780
5xr8 FMNCannabinoid receptor 1 / 0.763
1j9g FMNFlavodoxin / 0.761
3f6r FMNFlavodoxin / 0.761
2fcr FMNFlavodoxin / 0.760
3f90 FMNFlavodoxin / 0.751
2v5v FMNFlavodoxin / 0.742
3f6s FMNFlavodoxin / 0.742
2bf4 FMNNADPH--cytochrome P450 reductase / 0.733
4yao FMNNADPH--cytochrome P450 reductase / 0.727
3esy FMNFlavodoxin / 0.724
3qfr FMNNADPH--cytochrome P450 reductase / 0.720
3n39 FMNProtein NrdI / 0.717
5fx2 FMNFlavodoxin / 0.713
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.712
3kap FMNFlavodoxin / 0.710
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.706
3qe2 FMNNADPH--cytochrome P450 reductase / 0.705
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.693
1ja0 FMNNADPH--cytochrome P450 reductase / 0.692
1amo FMNNADPH--cytochrome P450 reductase / 0.691
4oxx FMNCindoxin / 0.689
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.688
1fue FMNFlavodoxin / 0.686
4y7c FMNNADPH--cytochrome P450 reductase / 0.686
3ojw FMNNADPH--cytochrome P450 reductase / 0.684
3ojx FMNNADPH--cytochrome P450 reductase / 0.672
2mok FMNFlavodoxin 1 / 0.671
1ycf FMNNitric oxide reductase 1 0.666
1ycg FMNNitric oxide reductase 1 0.666
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.664
4bmp FMNProtein NrdI / 0.661
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.659
3n3a FMNProtein NrdI / 0.654
4bmo FMNProtein NrdI / 0.652