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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fue FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fue FMNFlavodoxin / 1.058
3ojx FMNNADPH--cytochrome P450 reductase / 0.829
1yob FMNFlavodoxin 2 / 0.821
2w5u FMNFlavodoxin / 0.814
3qe2 FMNNADPH--cytochrome P450 reductase / 0.805
2bn4 FMNNADPH--cytochrome P450 reductase / 0.797
2fcr FMNFlavodoxin / 0.797
2bf4 FMNNADPH--cytochrome P450 reductase / 0.792
2v5v FMNFlavodoxin / 0.792
5tgz FMNCannabinoid receptor 1 / 0.791
3qfr FMNNADPH--cytochrome P450 reductase / 0.788
3ojw FMNNADPH--cytochrome P450 reductase / 0.786
3n39 FMNProtein NrdI / 0.771
4bmo FMNProtein NrdI / 0.769
4bmp FMNProtein NrdI / 0.766
1wsb FMNFlavodoxin / 0.760
4yao FMNNADPH--cytochrome P450 reductase / 0.760
3esy FMNFlavodoxin / 0.759
1c7f FMNFlavodoxin / 0.758
3n3b FMNProtein NrdI / 0.757
3n3a FMNProtein NrdI / 0.756
1j8q FMNFlavodoxin / 0.750
2fx2 FMNFlavodoxin / 0.748
1azl FMNFlavodoxin / 0.746
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.746
4oxx FMNCindoxin / 0.746
1ahn FMNFlavodoxin 1 / 0.745
1amo FMNNADPH--cytochrome P450 reductase / 0.736
1akw FMNFlavodoxin / 0.734
1ycg FMNNitric oxide reductase 1 0.728
1akr FMNFlavodoxin / 0.725
1czn FMNFlavodoxin / 0.721
4y7c FMNNADPH--cytochrome P450 reductase / 0.720
1aku FMNFlavodoxin / 0.717
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.717
1xyv FMNFlavodoxin / 0.711
1ycf FMNNitric oxide reductase 1 0.710
1bu5 RBFFlavodoxin / 0.702
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.700
4j8p FMNFlavodoxin / 0.699
2ohi FMNType A flavoprotein FprA 1 0.695
1ofv FMNFlavodoxin / 0.694
3e4v FMNUncharacterized protein / 0.693
1j9z FMNNADPH--cytochrome P450 reductase / 0.691
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.688
5xr8 FMNCannabinoid receptor 1 / 0.687
1fx1 FMNFlavodoxin / 0.686
3klb FMNUncharacterized protein / 0.677
3f90 FMNFlavodoxin / 0.667
5fx2 FMNFlavodoxin / 0.665
1ja1 FMNNADPH--cytochrome P450 reductase / 0.660
1ych FMNNitric oxide reductase 1 0.658
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.658
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.655