Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
1fr8 | GDU | Beta-1,4-galactosyltransferase 1 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
1fr8 | GDU | Beta-1,4-galactosyltransferase 1 | / | 0.877 | |
1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.744 | |
4e5i | 0N9 | Polymerase acidic protein | / | 0.744 | |
4ee3 | UDH | Beta-1,4-galactosyltransferase 1 | / | 0.683 | |
1yro | GDU | Beta-1,4-galactosyltransferase 1 | / | 0.666 | |
4e5f | 0N7 | Polymerase acidic protein | / | 0.660 |