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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fm7 DFV Chalcone--flavonone isomerase 1 5.5.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fm7 DFVChalcone--flavonone isomerase 1 5.5.1.6 1.033
1eyq NARChalcone--flavonone isomerase 1 5.5.1.6 0.803
1fm8 DDCChalcone--flavonone isomerase 1 5.5.1.6 0.729
1jx0 DFVChalcone--flavonone isomerase 1 5.5.1.6 0.711
4e5l DBHPolymerase acidic protein / 0.688
1m2r MNYCasein kinase II subunit alpha 2.7.11.1 0.669
2ye9 2D4Heat shock protein HSP 90-alpha / 0.659
3zly YSODual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.658