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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1f3e DPZ Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1f3e DPZQueuine tRNA-ribosyltransferase 2.4.2.29 0.872
1q63 AIQQueuine tRNA-ribosyltransferase 2.4.2.29 0.739
1r5y DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.732
1q4w DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.714
2qzr S79Queuine tRNA-ribosyltransferase 2.4.2.29 0.701
1y5w NEZQueuine tRNA-ribosyltransferase 2.4.2.29 0.674
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.665
1y5x E89Queuine tRNA-ribosyltransferase 2.4.2.29 0.658
4q8p CKRQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
4giy 0WYQueuine tRNA-ribosyltransferase 2.4.2.29 0.655