Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1exv 700 Glycogen phosphorylase, liver form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1exv 700Glycogen phosphorylase, liver form 2.4.1.1 1.004
1l5q 700Glycogen phosphorylase, liver form 2.4.1.1 0.982
1l5r 700Glycogen phosphorylase, liver form 2.4.1.1 0.980
1l5s 700Glycogen phosphorylase, liver form 2.4.1.1 0.979
1l7x 700Glycogen phosphorylase, liver form 2.4.1.1 0.933
1xoi 288Glycogen phosphorylase, liver form 2.4.1.1 0.903
1em6 CP4Glycogen phosphorylase, liver form 2.4.1.1 0.809
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2iei FRXGlycogen phosphorylase, muscle form 2.4.1.1 0.694
2ieg FRYGlycogen phosphorylase, muscle form 2.4.1.1 0.689
4e5f 0N7Polymerase acidic protein / 0.660
3iw5 DF3Mitogen-activated protein kinase 14 / 0.655
3l9n L9NcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654