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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1eou SMS Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1eou SMSCarbonic anhydrase 2 4.2.1.1 0.830
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.692
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.690
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.687
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.685
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.683
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.683
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.680
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.676
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.674
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.673
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.672
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.670
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.668
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.666
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.662
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.662
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.657
1okm SABCarbonic anhydrase 2 4.2.1.1 0.656
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.655
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.654
3mho J43Carbonic anhydrase 2 4.2.1.1 0.654
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.653
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.653
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.652
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.651