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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ee1 DND NH(3)-dependent NAD(+) synthetase 6.3.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ee1 DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 1.157
1kqp ADJNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.938
1xng DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.928
1ifx DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.849
3seq NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.707
3szg NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.702
1nsy ATPNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.691
3sez NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.674
3krf IPEGeranyl diphosphate synthase large subunit / 0.664
3syt NADGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.664
3dla NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.663