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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1djl NAP NAD(P) transhydrogenase, mitochondrial 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.438
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.333
1u31 NDPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.198
1pnq NDPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.139
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 1.138
4j1t NAPNAD(P) transhydrogenase subunit beta / 1.087
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.042
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.037
2fsv NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.984
4j16 NAPNAD(P) transhydrogenase subunit beta / 0.969
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.959
2fr8 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.872
1ptj NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.861
1hzz NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.825
3p19 NDPPutative blue fluorescent protein / 0.690
2oby NAPQuinone oxidoreductase PIG3 1 0.681
4l4x NDPAmphI / 0.681
3mje NDPAmphB / 0.679
5d2e NAPMlnE / 0.672
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.663
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.662
2g86 UMPThymidylate synthase / 0.658
2yay DUPDUTPase / 0.658
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.657
3ai3 NDPNADPH-sorbose reductase / 0.656
3tox NAPPutative oxidoreductase / 0.655
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.655
5doz NDPJamJ / 0.655
2g8d UMPThymidylate synthase / 0.654
3hiy UTPUncharacterized protein / 0.654
2jah NDPClavaldehyde dehydrogenase / 0.652
3aq0 ISYSolanesyl diphosphate synthase 3, chloroplastic/mitochondrial 2.5.1.85 0.651