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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d4o NAP NAD(P) transhydrogenase, mitochondrial

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 1.422
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.196
4j16 NAPNAD(P) transhydrogenase subunit beta / 1.156
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.138
1u31 NDPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.120
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.114
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.111
4j1t NAPNAD(P) transhydrogenase subunit beta / 1.072
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.065
1pnq NDPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.019
2fsv NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.980
2fr8 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.907
1hzz NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.906
1ptj NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.840
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.730
4ejm NAPPutative zinc-binding dehydrogenase / 0.716
4hxy NDPPlm1 / 0.694
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.679
2jah NDPClavaldehyde dehydrogenase / 0.675
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.674
1qor NDPQuinone oxidoreductase 1 / 0.673
5d2e NAPMlnE / 0.670
4bvh AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.662
3p19 NDPPutative blue fluorescent protein / 0.658
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.652
2b4y APRNAD-dependent protein deacylase sirtuin-5, mitochondrial / 0.651
3dk4 NDPGlutathione reductase, mitochondrial 1.8.1.7 0.650