Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
1d4h | BEH | Gag-Pol polyprotein | 3.4.23.16 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
1d4h | BEH | Gag-Pol polyprotein | 3.4.23.16 | 1.552 | |
1d4i | BEG | Gag-Pol polyprotein | 3.4.23.16 | 1.370 | |
1w5v | BE3 | Gag-Pol polyprotein | 3.4.23.16 | 1.363 | |
1d4j | MSC | Gag-Pol polyprotein | 3.4.23.16 | 1.342 | |
1eby | BEB | Gag-Pol polyprotein | 3.4.23.16 | 1.321 | |
1w5x | BE5 | Gag-Pol polyprotein | 3.4.23.16 | 1.202 | |
1ebz | BEC | Gag-Pol polyprotein | 3.4.23.16 | 1.197 | |
1wbk | 568 | Pol protein | / | 1.157 | |
1ec0 | BED | Gag-Pol polyprotein | 3.4.23.16 | 1.153 | |
1w5w | BE4 | Gag-Pol polyprotein | 3.4.23.16 | 1.131 | |
1ebw | BEI | Gag-Pol polyprotein | 3.4.23.16 | 1.013 | |
1w5y | BE6 | Gag-Pol polyprotein | 3.4.23.16 | 0.969 | |
1ec1 | BEE | Gag-Pol polyprotein | 3.4.23.16 | 0.929 | |
1ec2 | BEJ | Gag-Pol polyprotein | 3.4.23.16 | 0.912 | |
2uxz | HI1 | Gag-Pol polyprotein | 3.4.23.16 | 0.898 | |
2r5p | MK1 | Gag-Pol polyprotein | / | 0.883 | |
1wbm | BLL | Pol protein | / | 0.871 | |
1c6y | MK1 | Protease | / | 0.853 | |
1d4k | PI8 | Gag-Pol polyprotein | 3.4.23.16 | 0.818 | |
1xl5 | 190 | Gag-Pol polyprotein | 3.4.23.16 | 0.818 | |
2cen | 4AH | Protease | / | 0.802 | |
2avv | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.800 | |
2bqv | A1A | Protease | / | 0.797 | |
1sdu | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.796 | |
1hsg | MK1 | Gag-Pol polyprotein | / | 0.795 | |
2cem | 2AH | Pol protein | / | 0.792 | |
2bb9 | AKC | Gag-Pol polyprotein | 3.4.23.16 | 0.784 | |
1sdt | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.780 | |
1ec3 | MS3 | Gag-Pol polyprotein | 3.4.23.16 | 0.775 | |
1iiq | 0ZR | Gag-Pol polyprotein | 3.4.23.16 | 0.770 | |
3kdd | JZQ | Gag-Pol polyprotein | 3.4.23.16 | 0.760 | |
4kb9 | G79 | Protease | / | 0.760 | |
1izh | Q50 | Protease | / | 0.746 | |
1k1u | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.746 | |
4hdb | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.745 | |
1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.744 | |
2q5k | AB1 | Protease | / | 0.744 | |
4e5i | 0N9 | Polymerase acidic protein | / | 0.744 | |
1bdr | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.743 | |
3vfb | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.741 | |
1b6k | PI5 | Gag-Pol polyprotein | 3.4.23.16 | 0.740 | |
1b6p | PI7 | Gag-Pol polyprotein | 3.4.23.16 | 0.740 | |
3kdc | JZP | Gag-Pol polyprotein | 3.4.23.16 | 0.736 | |
1g35 | AHF | Gag-Pol polyprotein | 3.4.23.16 | 0.735 | |
2wl0 | 5AH | Gag-Pol polyprotein | / | 0.734 | |
1k6t | XN1 | Gag-Pol polyprotein | 3.4.23.16 | 0.732 | |
2i0a | MUI | Protease | / | 0.732 | |
3kdb | 006 | Gag-Pol polyprotein | 3.4.23.16 | 0.730 | |
1fg6 | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.729 | |
1k6p | XN3 | Gag-Pol polyprotein | 3.4.23.16 | 0.726 | |
2bpy | 3IN | Gag-Pol polyprotein | 3.4.23.16 | 0.723 | |
2avs | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.722 | |
2hb3 | GRL | Protease | / | 0.722 | |
3o9a | K14 | Pol polyprotein | / | 0.719 | |
2bpz | 3IN | Gag-Pol polyprotein | 3.4.23.16 | 0.718 | |
2pwc | G3G | Gag-Pol polyprotein | 3.4.23.16 | 0.717 | |
1kzk | JE2 | Gag-Pol polyprotein | 3.4.23.16 | 0.716 | |
1ffi | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.715 | |
2pqz | G0G | Gag-Pol polyprotein | 3.4.23.16 | 0.715 | |
2r43 | G3G | Gag-Pol polyprotein | 3.4.23.16 | 0.713 | |
2f80 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.711 | |
2fdd | 385 | Pol protein | / | 0.711 | |
3qp0 | NI8 | Gag-Pol polyprotein | 3.4.23.16 | 0.705 | |
1hsh | MK1 | Gag-Pol polyprotein | / | 0.704 | |
3gi6 | D78 | Gag-Pol polyprotein | / | 0.703 | |
1hos | PHP | Gag-Pol polyprotein | / | 0.702 | |
1hvr | XK2 | Gag-Pol polyprotein | / | 0.702 | |
2bpv | 1IN | Gag-Pol polyprotein | 3.4.23.16 | 0.702 | |
3pwm | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.702 | |
3vf7 | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.700 | |
2avm | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.699 | |
3ok9 | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.697 | |
3ndx | RIT | Gag-Pol polyprotein | 3.4.23.16 | 0.696 | |
4hdf | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.696 | |
2qd8 | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.695 | |
3qrm | NK7 | Gag-Pol polyprotein | 3.4.23.16 | 0.695 | |
3em4 | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.694 | |
3sab | F78 | Protease | / | 0.692 | |
1npa | 3NH | Gag-Pol polyprotein | 3.4.23.16 | 0.690 | |
1npw | LGZ | Gag-Pol polyprotein | 3.4.23.16 | 0.690 | |
3zps | EQM | Gag-Pol polyprotein | 3.4.23.16 | 0.690 | |
1k2b | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.689 | |
2bbb | HH1 | Gag-Pol polyprotein | 3.4.23.16 | 0.689 | |
3djk | G55 | Gag-Pol polyprotein | 3.4.23.16 | 0.689 | |
3i6o | GR6 | Gag-Pol polyprotein | 3.4.23.16 | 0.689 | |
3lzs | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.689 | |
3sa5 | A69 | Protease | / | 0.689 | |
3gi4 | K60 | Gag-Pol polyprotein | / | 0.688 | |
3bxr | DRR | Gag-Pol polyprotein | 3.4.23.16 | 0.686 | |
3eky | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.686 | |
3vfa | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.686 | |
4a4q | UX9 | Pol protein | / | 0.686 | |
4j55 | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.686 | |
1k6c | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.682 | |
1c70 | L75 | Protease | / | 0.680 | |
3o9b | K2A | Pol polyprotein | / | 0.679 | |
4hdp | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.679 | |
1mrw | K57 | Gag-Pol polyprotein | 3.4.23.16 | 0.678 | |
2f8g | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.678 | |
2pk6 | O33 | V-1 protease | / | 0.678 | |
1sgu | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.677 | |
3st5 | G89 | Gag-Pol polyprotein | 3.4.23.16 | 0.675 | |
1k2c | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.672 | |
2wkz | 5AH | Gag-Pol polyprotein | / | 0.672 | |
1ebk | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.671 | |
2uy0 | HV1 | Gag-Pol polyprotein | 3.4.23.16 | 0.671 | |
4rvj | 478 | Protease | / | 0.671 | |
3gga | GGW | Gag-Pol polyprotein | / | 0.668 | |
3i7e | DJR | Gag-Pol polyprotein | / | 0.668 | |
1bdq | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.667 | |
2aqu | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.666 | |
3gi5 | K62 | Gag-Pol polyprotein | / | 0.666 | |
1hvk | A79 | Gag-Pol polyprotein | / | 0.665 | |
1tcx | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.665 | |
1z1h | HBB | Gag-Pol polyprotein | 3.4.23.16 | 0.665 | |
1ajv | NMB | Gag-Pol polyprotein | 3.4.23.16 | 0.663 | |
1mtr | PI6 | Gag-Pol polyprotein | 3.4.23.16 | 0.663 | |
2pwr | G4G | Gag-Pol polyprotein | 3.4.23.16 | 0.663 | |
2r38 | G4G | Gag-Pol polyprotein | 3.4.23.16 | 0.662 | |
2upj | U02 | Gag-Pol polyprotein | 3.4.23.16 | 0.662 | |
4ye3 | G04 | Gag-Pol polyprotein | 3.4.23.16 | 0.662 | |
1d4l | PI9 | Gag-Pol polyprotein | 3.4.23.16 | 0.660 | |
1yt9 | OIS | Gag-Pol polyprotein | / | 0.660 | |
2qnp | QN2 | Gag-Pol polyprotein | 3.4.23.16 | 0.660 | |
3i2l | 2NC | Protease | / | 0.660 | |
3nu9 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.660 | |
4e5f | 0N7 | Polymerase acidic protein | / | 0.660 | |
3sa7 | 55A | Protease | / | 0.659 | |
4i8z | G08 | Gag-Pol polyprotein | 3.4.23.16 | 0.659 | |
1b6l | PI4 | Gag-Pol polyprotein | 3.4.23.16 | 0.658 | |
1hxw | RIT | Gag-Pol polyprotein | / | 0.658 | |
2qi0 | MZ3 | Gag-Pol polyprotein | / | 0.658 | |
3o9f | K2D | Gag-Pol polyprotein | / | 0.658 | |
4j54 | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.658 | |
3nxe | 2NC | Protease | / | 0.657 | |
3qpj | N4I | Gag-Pol polyprotein | 3.4.23.16 | 0.657 | |
2qnq | QN3 | Gag-Pol polyprotein | 3.4.23.16 | 0.656 | |
2rkg | AB1 | Pol protein | / | 0.656 | |
3lzv | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.656 | |
2z4o | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.655 | |
3el4 | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.655 | |
1daz | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.654 | |
2r3t | G4G | Gag-Pol polyprotein | 3.4.23.16 | 0.654 | |
1idb | 0DO | Gag-Pol polyprotein | / | 0.653 | |
1npv | L27 | Gag-Pol polyprotein | 3.4.23.16 | 0.653 | |
1mui | AB1 | Protease | / | 0.652 | |
3sa3 | 23X | Protease | / | 0.652 | |
3sa8 | K83 | Protease | / | 0.652 | |
2pym | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.651 | |
3jw2 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.651 | |
3o9c | K20 | Pol polyprotein | / | 0.651 | |
1sbg | IM1 | Gag-Pol polyprotein | / | 0.650 |