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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ci0 FMN Pyridoxamine 5'-phosphate oxidase 1.4.3.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 1.297
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.841
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.818
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.808
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.778
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.761
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.742
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.697
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.695
3a6r FMNFMN-binding protein / 0.677
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.674
3a6q FMNFMN-binding protein / 0.674
3qfc FADNADPH--cytochrome P450 reductase / 0.668
3dga UMPBifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.666
3e4v FMNUncharacterized protein / 0.662
3qe2 FADNADPH--cytochrome P450 reductase / 0.661
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.659
3vy2 FMNFMN-binding protein / 0.659
4dlc UMPDeoxyuridine triphosphatase, putative / 0.657
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.656
5cho FADFlavin reductase / 0.653
4ybn FADFlavin-nucleotide-binding protein / 0.652
2eix FADNADH-cytochrome b5 reductase / 0.651