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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cg6 MTA S-methyl-5'-thioadenosine phosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cg6 MTAS-methyl-5'-thioadenosine phosphorylase / 0.932
1k27 MTMS-methyl-5'-thioadenosine phosphorylase / 0.820
1sd2 MTHS-methyl-5'-thioadenosine phosphorylase / 0.818
4l5a TBNS-methyl-5'-thioadenosine phosphorylase / 0.774
1jdv ADNPurine nucleoside phosphorylase / 0.728
3t94 MTAS-methyl-5'-thioadenosine phosphorylase / 0.727
1jdt MTAPurine nucleoside phosphorylase / 0.715
2a8y MTAS-methyl-5'-thioadenosine phosphorylase / 0.689
3f8w ADNPurine nucleoside phosphorylase / 0.688
3faz NOSPurine nucleoside phosphorylase / 0.675
2bsx NOSPurine nucleoside phosphorylase / 0.667
3uaw ADNPurine nucleoside phosphorylase DeoD-type / 0.664
4ts9 FMCPurine nucleoside phosphorylase DeoD-type / 0.663
1zos MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.662
3rqq BA3ADP-dependent (S)-NAD(P)H-hydrate dehydratase / 0.658
1y6r MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.651