1.450 Å
X-ray
2011-08-02
Name: | S-methyl-5'-thioadenosine phosphorylase |
---|---|
ID: | MTAP_SULSO |
AC: | Q97W94 |
Organism: | Sulfolobus solfataricus |
Reign: | Archaea |
TaxID: | 273057 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 89 % |
E | 11 % |
B-Factor: | 23.963 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 38 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.850 | 290.250 |
% Hydrophobic | % Polar |
---|---|
48.84 | 51.16 |
According to VolSite |
HET Code: | MTA |
---|---|
Formula: | C11H15N5O3S |
Molecular weight: | 297.333 g/mol |
DrugBank ID: | DB02282 |
Buried Surface Area: | 83.68 % |
Polar Surface area: | 144.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
42.4288 | -2.0695 | -46.4027 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CS | CB | SER- 16 | 4.17 | 0 | Hydrophobic |
C3' | CG | PRO- 67 | 4.25 | 0 | Hydrophobic |
S5' | CZ | PHE- 170 | 4.17 | 0 | Hydrophobic |
C2' | CG | MET- 190 | 3.91 | 0 | Hydrophobic |
C3' | SD | MET- 190 | 3.91 | 0 | Hydrophobic |
O2' | N | MET- 190 | 2.95 | 144.3 | H-Bond (Protein Donor) |
N6 | OD2 | ASP- 214 | 2.93 | 167.74 | H-Bond (Ligand Donor) |
N6 | OD1 | ASP- 216 | 2.93 | 168.61 | H-Bond (Ligand Donor) |
S5' | CB | ALA- 225 | 3.96 | 0 | Hydrophobic |
CS | CG1 | VAL- 228 | 3.83 | 0 | Hydrophobic |
S5' | CB | VAL- 228 | 3.79 | 0 | Hydrophobic |
CS | CG2 | VAL- 270 | 3.75 | 0 | Hydrophobic |
N1 | O | HOH- 282 | 2.86 | 179.95 | H-Bond (Protein Donor) |
O3' | O | HOH- 714 | 3.03 | 179.97 | H-Bond (Protein Donor) |