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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

3t94

1.450 Å

X-ray

2011-08-02

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:S-methyl-5'-thioadenosine phosphorylase
ID:MTAP_SULSO
AC:Q97W94
Organism:Sulfolobus solfataricus
Reign:Archaea
TaxID:273057
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
D89 %
E11 %


Ligand binding site composition:

B-Factor:23.963
Number of residues:41
Including
Standard Amino Acids: 38
Non Standard Amino Acids: 0
Water Molecules: 3
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.850290.250

% Hydrophobic% Polar
48.8451.16
According to VolSite

Ligand :
3t94_4 Structure
HET Code: MTA
Formula: C11H15N5O3S
Molecular weight: 297.333 g/mol
DrugBank ID: DB02282
Buried Surface Area:83.68 %
Polar Surface area: 144.61 Å2
Number of
H-Bond Acceptors: 8
H-Bond Donors: 3
Rings: 3
Aromatic rings: 2
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
42.4288-2.0695-46.4027


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
CSCBSER- 164.170Hydrophobic
C3'CGPRO- 674.250Hydrophobic
S5'CZPHE- 1704.170Hydrophobic
C2'CGMET- 1903.910Hydrophobic
C3'SDMET- 1903.910Hydrophobic
O2'NMET- 1902.95144.3H-Bond
(Protein Donor)
N6OD2ASP- 2142.93167.74H-Bond
(Ligand Donor)
N6OD1ASP- 2162.93168.61H-Bond
(Ligand Donor)
S5'CBALA- 2253.960Hydrophobic
CSCG1VAL- 2283.830Hydrophobic
S5'CBVAL- 2283.790Hydrophobic
CSCG2VAL- 2703.750Hydrophobic
N1OHOH- 2822.86179.95H-Bond
(Protein Donor)
O3'OHOH- 7143.03179.97H-Bond
(Protein Donor)