Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c1c 612 Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1c1c 612Gag-Pol polyprotein 2.7.7.49 1.202
1rt1 MKCGag-Pol polyprotein 2.7.7.49 0.851
1c1b GCAGag-Pol polyprotein 2.7.7.49 0.749
1jla TNKGag-Pol polyprotein 2.7.7.49 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2rki TT1Gag-Pol polyprotein 2.7.7.49 0.704
1rti HEFGag-Pol polyprotein 2.7.7.49 0.679
1tkz H16Gag-Pol polyprotein 2.7.7.49 0.676
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.663
4e5f 0N7Polymerase acidic protein / 0.660
2ban 357Gag-Pol polyprotein 2.7.7.49 0.658
1rt2 TNKGag-Pol polyprotein 2.7.7.49 0.657
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.657