Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
1a8r | GTP | GTP cyclohydrolase 1 | 3.5.4.16 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
1a8r | GTP | GTP cyclohydrolase 1 | 3.5.4.16 | 1.242 | |
1a9c | GTP | GTP cyclohydrolase 1 | 3.5.4.16 | 1.101 | |
1wuq | 8GT | GTP cyclohydrolase 1 | / | 1.011 | |
1n3r | GTP | GTP cyclohydrolase 1 | 3.5.4.16 | 0.933 | |
1n3s | GTP | GTP cyclohydrolase 1 | 3.5.4.16 | 0.921 | |
1wur | 8DG | GTP cyclohydrolase 1 | / | 0.874 | |
4du6 | GTP | GTP cyclohydrolase 1 | / | 0.798 | |
5f1c | ATP | Uncharacterized protein | / | 0.674 | |
2nx3 | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.670 | |
3tn7 | NJP | Short-chain alcohol dehydrogenase | / | 0.652 | |
3uxv | GUN | NADPH-dependent 7-cyano-7-deazaguanine reductase | / | 0.651 | |
4dfk | 0L5 | DNA polymerase I, thermostable | 2.7.7.7 | 0.650 |