1.490 Å
X-ray
2016-01-27
Name: | Putative xylulose kinase |
---|---|
ID: | Q8L794_ARATH |
AC: | Q8L794 |
Organism: | Arabidopsis thaliana |
Reign: | Eukaryota |
TaxID: | 3702 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 19.329 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.686 | 394.875 |
% Hydrophobic | % Polar |
---|---|
54.70 | 45.30 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 49.97 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-6.912 | -8.54304 | 168.881 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | SER- 258 | 2.96 | 177.46 | H-Bond (Protein Donor) |
O1B | OG | SER- 258 | 3.37 | 120.19 | H-Bond (Protein Donor) |
O2B | OG | SER- 258 | 3.1 | 149.3 | H-Bond (Protein Donor) |
C2' | CD1 | LEU- 308 | 4.25 | 0 | Hydrophobic |
O1A | N | GLY- 391 | 2.99 | 145.49 | H-Bond (Protein Donor) |
O5' | N | GLY- 391 | 3.39 | 132.63 | H-Bond (Protein Donor) |
N1 | ND2 | ASN- 395 | 3.03 | 162.32 | H-Bond (Protein Donor) |
O2' | O | HOH- 668 | 2.87 | 172.11 | H-Bond (Ligand Donor) |