2.610 Å
X-ray
2015-09-25
Name: | Ribonuclease 4 |
---|---|
ID: | RNAS4_PIG |
AC: | P15468 |
Organism: | Sus scrofa |
Reign: | Eukaryota |
TaxID: | 9823 |
EC Number: | 3.1.27 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 6 % |
B | 94 % |
B-Factor: | 42.040 |
---|---|
Number of residues: | 17 |
Including | |
Standard Amino Acids: | 17 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.487 | 715.500 |
% Hydrophobic | % Polar |
---|---|
44.34 | 55.66 |
According to VolSite |
HET Code: | DCM |
---|---|
Formula: | C9H12N3O7P |
Molecular weight: | 305.181 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 38.72 % |
Polar Surface area: | 170.38 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-24.2161 | -31.3873 | -13.8853 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3' | NZ | LYS- 40 | 3.44 | 145.7 | H-Bond (Protein Donor) |
N3 | OG1 | THR- 44 | 2.99 | 157.43 | H-Bond (Protein Donor) |
O2 | N | THR- 44 | 2.53 | 125.03 | H-Bond (Protein Donor) |
O2P | NE2 | HIS- 116 | 2.85 | 127.76 | H-Bond (Protein Donor) |