1.900 Å
X-ray
2013-06-09
Name: | Major histocompatibility complex class I-related gene protein |
---|---|
ID: | HMR1_HUMAN |
AC: | Q95460 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 83 % |
G | 10 % |
H | 7 % |
B-Factor: | 18.536 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.376 | 705.375 |
% Hydrophobic | % Polar |
---|---|
47.37 | 52.63 |
According to VolSite |
HET Code: | 1VY |
---|---|
Formula: | C12H16N4O7 |
Molecular weight: | 328.278 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 78.46 % |
Polar Surface area: | 175.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 6 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-90.5067 | 65.4805 | 94.8767 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C9 | CZ | TYR- 7 | 3.91 | 0 | Hydrophobic |
C1' | CD2 | TYR- 7 | 3.61 | 0 | Hydrophobic |
O2 | NE | ARG- 9 | 2.8 | 163.94 | H-Bond (Protein Donor) |
O3' | NH2 | ARG- 9 | 3.03 | 121.56 | H-Bond (Protein Donor) |
O4' | NH2 | ARG- 9 | 2.87 | 132.12 | H-Bond (Protein Donor) |
N3 | OG | SER- 24 | 2.78 | 164.79 | H-Bond (Ligand Donor) |
N5 | NZ | LYS- 43 | 3.1 | 165.48 | H-Bond (Protein Donor) |
C9 | CE1 | TYR- 62 | 3.48 | 0 | Hydrophobic |
C4' | CZ2 | TRP- 69 | 4.2 | 0 | Hydrophobic |
C3' | CH2 | TRP- 69 | 3.79 | 0 | Hydrophobic |
O3' | NH1 | ARG- 94 | 2.84 | 138.71 | H-Bond (Protein Donor) |
O2' | OH | TYR- 95 | 2.83 | 161.74 | H-Bond (Protein Donor) |
C1' | CG2 | ILE- 96 | 4.36 | 0 | Hydrophobic |
C5' | CD1 | ILE- 96 | 3.34 | 0 | Hydrophobic |
O5' | OH | TYR- 152 | 3.01 | 154.04 | H-Bond (Ligand Donor) |
O5' | NE2 | GLN- 153 | 2.79 | 171.66 | H-Bond (Protein Donor) |
C1' | CZ2 | TRP- 156 | 3.54 | 0 | Hydrophobic |
O2 | O | HOH- 402 | 2.89 | 179.97 | H-Bond (Protein Donor) |