2.120 Å
X-ray
2012-03-21
| Name: | Dehydrosqualene synthase |
|---|---|
| ID: | CRTM_STAAU |
| AC: | A9JQL9 |
| Organism: | Staphylococcus aureus |
| Reign: | Bacteria |
| TaxID: | 1280 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 31.779 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 3 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.347 | 982.125 |
| % Hydrophobic | % Polar |
|---|---|
| 42.61 | 57.39 |
| According to VolSite | |

| HET Code: | 651 |
|---|---|
| Formula: | C19H22NO |
| Molecular weight: | 280.384 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 62.05 % |
| Polar Surface area: | 24.67 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 2 |
| Rings: | 5 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 26.178 | -14.342 | 8.16929 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAS | CE2 | TYR- 41 | 4.2 | 0 | Hydrophobic |
| CAL | CB | ASP- 48 | 4.06 | 0 | Hydrophobic |
| OAA | O | VAL- 133 | 3.36 | 164.45 | H-Bond (Ligand Donor) |
| CAJ | CB | ALA- 134 | 3.75 | 0 | Hydrophobic |
| CAF | CB | VAL- 137 | 3.83 | 0 | Hydrophobic |
| CAH | CB | VAL- 137 | 3.87 | 0 | Hydrophobic |
| CAG | CG1 | VAL- 137 | 3.8 | 0 | Hydrophobic |
| CAJ | CG2 | VAL- 137 | 3.86 | 0 | Hydrophobic |
| CAQ | CG1 | VAL- 137 | 3.74 | 0 | Hydrophobic |
| CAB | CD1 | LEU- 141 | 3.8 | 0 | Hydrophobic |
| CAB | CG | LEU- 160 | 3.95 | 0 | Hydrophobic |
| CAE | CD1 | LEU- 164 | 3.5 | 0 | Hydrophobic |