Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

3qus

2.840 Å

X-ray

2011-02-24

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Formate--tetrahydrofolate ligase
ID:FTHS_MOOTH
AC:P21164
Organism:Moorella thermoacetica
Reign:Bacteria
TaxID:1525
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:23.811
Number of residues:27
Including
Standard Amino Acids: 27
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.657931.500

% Hydrophobic% Polar
36.5963.41
According to VolSite

Ligand :
3qus_1 Structure
HET Code: AGS
Formula: C10H14N5O12P3S
Molecular weight: 521.231 g/mol
DrugBank ID: DB02930
Buried Surface Area:44.7 %
Polar Surface area: 329.24 Å2
Number of
H-Bond Acceptors: 17
H-Bond Donors: 5
Rings: 3
Aromatic rings: 2
Anionic atoms: 2
Cationic atoms: 0
Rule of Five Violation: 2
Rotatable Bonds: 8

Mass center Coordinates

XYZ
-18.4265-1.8205268.0542


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
O1BOG1THR- 752.71152.28H-Bond
(Protein Donor)
O2ANTHR- 763.16153.81H-Bond
(Protein Donor)
O2AOG1THR- 762.88160.55H-Bond
(Protein Donor)
C5'CBTHR- 764.330Hydrophobic
N6OALA- 3833.19131.77H-Bond
(Ligand Donor)
C1'CZPHE- 3844.30Hydrophobic
DuArDuArTRP- 4123.570Aromatic Face/Face