1.800 Å
X-ray
2010-01-29
| Name: | Catechol 2,3-dioxygenase |
|---|---|
| ID: | Q0S9X1_RHOJR |
| AC: | Q0S9X1 |
| Organism: | Rhodococcus jostii |
| Reign: | Bacteria |
| TaxID: | 101510 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 14.034 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | FE |
| Ligandability | Volume (Å3) |
|---|---|
| 1.461 | 388.125 |
| % Hydrophobic | % Polar |
|---|---|
| 79.13 | 20.87 |
| According to VolSite | |

| HET Code: | HPX |
|---|---|
| Formula: | C12H9O4 |
| Molecular weight: | 217.197 g/mol |
| DrugBank ID: | DB07914 |
| Buried Surface Area: | 66.26 % |
| Polar Surface area: | 77.43 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 12.0902 | 50.7827 | 50.6082 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CB6 | CD1 | ILE- 189 | 3.73 | 0 | Hydrophobic |
| CA3 | CZ2 | TRP- 192 | 3.99 | 0 | Hydrophobic |
| OA1 | NE1 | TRP- 192 | 3.08 | 137.09 | H-Bond (Protein Donor) |
| CB3 | CB | MET- 205 | 3.94 | 0 | Hydrophobic |
| CA3 | SD | MET- 205 | 3.85 | 0 | Hydrophobic |
| CB2 | SD | MET- 205 | 3.57 | 0 | Hydrophobic |
| CB4 | CG | MET- 208 | 3.86 | 0 | Hydrophobic |
| CB5 | SD | MET- 208 | 4.29 | 0 | Hydrophobic |
| CA3 | CZ | TYR- 308 | 3.98 | 0 | Hydrophobic |
| CB3 | CB | PHE- 309 | 4.28 | 0 | Hydrophobic |