2.300 Å
X-ray
2008-10-27
Name: | 8-oxoguanine-DNA-glycosylase |
---|---|
ID: | Q97FM4_CLOAB |
AC: | Q97FM4 |
Organism: | Clostridium acetobutylicum |
Reign: | Bacteria |
TaxID: | 272562 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 29.136 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.530 | 506.250 |
% Hydrophobic | % Polar |
---|---|
40.67 | 59.33 |
According to VolSite |
HET Code: | 8HG |
---|---|
Formula: | C10H13N5O5 |
Molecular weight: | 283.241 g/mol |
DrugBank ID: | DB02502 |
Buried Surface Area: | 71.99 % |
Polar Surface area: | 149.51 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
28.197 | -12.0312 | -11.3477 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N7 | O | GLY- 30 | 2.83 | 167.83 | H-Bond (Ligand Donor) |
C2' | CB | SER- 125 | 3.81 | 0 | Hydrophobic |
C5' | CD1 | ILE- 130 | 3.62 | 0 | Hydrophobic |
C5' | CD1 | ILE- 133 | 4.42 | 0 | Hydrophobic |
N2 | O | PRO- 239 | 3.25 | 125.73 | H-Bond (Ligand Donor) |
N2 | OD2 | ASP- 241 | 3.23 | 122.91 | H-Bond (Ligand Donor) |
N1 | OE1 | GLN- 278 | 3.32 | 142.77 | H-Bond (Ligand Donor) |
N2 | OE1 | GLN- 278 | 3.24 | 149.36 | H-Bond (Ligand Donor) |
O6 | NE2 | GLN- 279 | 3.25 | 167.5 | H-Bond (Protein Donor) |
O5' | NH1 | ARG- 286 | 3.19 | 128.17 | H-Bond (Protein Donor) |