1.900 Å
X-ray
2008-04-09
Name: | Beta-glucosidase A |
---|---|
ID: | BGLA_THEMA |
AC: | Q08638 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | 3.2.1.21 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 36.822 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.532 | 648.000 |
% Hydrophobic | % Polar |
---|---|
45.31 | 54.69 |
According to VolSite |
HET Code: | NCW |
---|---|
Formula: | C15H28N2O4S |
Molecular weight: | 332.459 g/mol |
DrugBank ID: | DB08260 |
Buried Surface Area: | 58.9 % |
Polar Surface area: | 117.28 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
-21.9155 | -30.6379 | -4.21514 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O4 | NE2 | GLN- 20 | 2.84 | 170.93 | H-Bond (Protein Donor) |
O3 | OE1 | GLN- 20 | 2.55 | 139.5 | H-Bond (Ligand Donor) |
O3 | NE2 | HIS- 121 | 3.13 | 156.11 | H-Bond (Protein Donor) |
C2 | CH2 | TRP- 122 | 3.89 | 0 | Hydrophobic |
C15 | CH2 | TRP- 168 | 4.24 | 0 | Hydrophobic |
C14 | CG2 | VAL- 173 | 4.04 | 0 | Hydrophobic |
C11 | CG2 | VAL- 173 | 4.13 | 0 | Hydrophobic |
C14 | CE2 | TYR- 177 | 3.68 | 0 | Hydrophobic |
C6 | CZ | TYR- 295 | 3.55 | 0 | Hydrophobic |
C1 | CE2 | TYR- 295 | 3.86 | 0 | Hydrophobic |
C5 | CH2 | TRP- 324 | 4.48 | 0 | Hydrophobic |
C9 | CZ2 | TRP- 324 | 4.12 | 0 | Hydrophobic |
O2 | OE1 | GLU- 351 | 2.81 | 162.64 | H-Bond (Ligand Donor) |
C6 | CE2 | TRP- 398 | 4.31 | 0 | Hydrophobic |
C3 | CZ2 | TRP- 398 | 3.79 | 0 | Hydrophobic |
N2 | OE2 | GLU- 405 | 3.22 | 121.62 | H-Bond (Ligand Donor) |
O3 | NE1 | TRP- 406 | 2.93 | 168.54 | H-Bond (Protein Donor) |
C6 | CZ | PHE- 414 | 4.12 | 0 | Hydrophobic |
O4 | O | HOH- 2249 | 3.42 | 120.55 | H-Bond (Protein Donor) |