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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vrj NCW Beta-glucosidase A 3.2.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vrj NCWBeta-glucosidase A 3.2.1.21 1.078
2j7c IDEBeta-glucosidase A 3.2.1.21 0.796
2j7d GI1Beta-glucosidase A 3.2.1.21 0.756
2wbg LGSBeta-glucosidase A 3.2.1.21 0.744
3vil SA0Beta-glucosidase / 0.733
3ptq NFGBeta-glucosidase 12 / 0.716
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.712
1e1f PSG4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic 3.2.1.182 0.705
3zj7 C1KStrictosidine-O-beta-D-glucosidase 3.2.1.105 0.678
3ai0 PNWBeta-glucosidase / 0.654