1.700 Å
X-ray
2007-08-23
Name: | Phosphotriesterase |
---|---|
ID: | Q93LD7_RHIRD |
AC: | Q93LD7 |
Organism: | Rhizobium radiobacter |
Reign: | Bacteria |
TaxID: | 358 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 14.809 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | FE2 |
Ligandability | Volume (Å3) |
---|---|
0.473 | 398.250 |
% Hydrophobic | % Polar |
---|---|
48.31 | 51.69 |
According to VolSite |
HET Code: | EPL |
---|---|
Formula: | C11H17O5P |
Molecular weight: | 260.223 g/mol |
DrugBank ID: | DB07721 |
Buried Surface Area: | 64.41 % |
Polar Surface area: | 63.8 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 0 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
26.7212 | 19.7984 | 1.24406 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | CD1 | ILE- 106 | 4.35 | 0 | Hydrophobic |
C11 | CG2 | ILE- 106 | 3.8 | 0 | Hydrophobic |
O1 | NE1 | TRP- 131 | 3.11 | 139.26 | H-Bond (Protein Donor) |
C10 | CZ2 | TRP- 131 | 3.51 | 0 | Hydrophobic |
O2 | NH2 | ARG- 254 | 2.89 | 124.06 | H-Bond (Protein Donor) |
C9 | CZ | TYR- 257 | 3.77 | 0 | Hydrophobic |
C9 | CD2 | LEU- 271 | 3.54 | 0 | Hydrophobic |
C2 | CD1 | LEU- 271 | 3.83 | 0 | Hydrophobic |
C11 | CD2 | LEU- 303 | 4.3 | 0 | Hydrophobic |
C9 | CZ | PHE- 306 | 3.48 | 0 | Hydrophobic |
C5 | CB | SER- 308 | 4.33 | 0 | Hydrophobic |