1.630 Å
X-ray
2007-06-12
| Name: | Methionine aminopeptidase |
|---|---|
| ID: | MAP1_ECOLI |
| AC: | P0AE18 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 17.060 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.675 | 465.750 |
| % Hydrophobic | % Polar |
|---|---|
| 49.28 | 50.72 |
| According to VolSite | |

| HET Code: | A04 |
|---|---|
| Formula: | C12H6F3O4 |
| Molecular weight: | 271.169 g/mol |
| DrugBank ID: | DB07304 |
| Buried Surface Area: | 71.31 % |
| Polar Surface area: | 62.5 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 0 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -3.33216 | -0.164842 | 9.14611 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| FAN | SG | CYS- 59 | 3.74 | 0 | Hydrophobic |
| FAM | CB | CYS- 59 | 3.36 | 0 | Hydrophobic |
| FAO | CB | TYR- 62 | 3.47 | 0 | Hydrophobic |
| FAN | CD2 | TYR- 62 | 3.87 | 0 | Hydrophobic |
| CAF | CB | HIS- 63 | 4.06 | 0 | Hydrophobic |
| FAM | CD2 | TYR- 65 | 3.36 | 0 | Hydrophobic |
| FAO | CG | TYR- 65 | 3.45 | 0 | Hydrophobic |
| FAM | SG | CYS- 70 | 3.31 | 0 | Hydrophobic |
| FAN | CE2 | PHE- 177 | 3.38 | 0 | Hydrophobic |
| OAR | NE2 | HIS- 178 | 2.76 | 151.4 | H-Bond (Protein Donor) |
| OAP | NE2 | HIS- 178 | 3.22 | 126.73 | H-Bond (Protein Donor) |
| CAI | CZ3 | TRP- 221 | 3.23 | 0 | Hydrophobic |
| OAQ | MN | MN- 301 | 2.14 | 0 | Metal Acceptor |
| OAQ | MN | MN- 302 | 2.4 | 0 | Metal Acceptor |
| OAR | MN | MN- 302 | 2.28 | 0 | Metal Acceptor |