1.630 Å
X-ray
2007-06-12
Name: | Methionine aminopeptidase |
---|---|
ID: | MAP1_ECOLI |
AC: | P0AE18 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 17.060 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.675 | 465.750 |
% Hydrophobic | % Polar |
---|---|
49.28 | 50.72 |
According to VolSite |
HET Code: | A04 |
---|---|
Formula: | C12H6F3O4 |
Molecular weight: | 271.169 g/mol |
DrugBank ID: | DB07304 |
Buried Surface Area: | 71.31 % |
Polar Surface area: | 62.5 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-3.33216 | -0.164842 | 9.14611 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
FAN | SG | CYS- 59 | 3.74 | 0 | Hydrophobic |
FAM | CB | CYS- 59 | 3.36 | 0 | Hydrophobic |
FAO | CB | TYR- 62 | 3.47 | 0 | Hydrophobic |
FAN | CD2 | TYR- 62 | 3.87 | 0 | Hydrophobic |
CAF | CB | HIS- 63 | 4.06 | 0 | Hydrophobic |
FAM | CD2 | TYR- 65 | 3.36 | 0 | Hydrophobic |
FAO | CG | TYR- 65 | 3.45 | 0 | Hydrophobic |
FAM | SG | CYS- 70 | 3.31 | 0 | Hydrophobic |
FAN | CE2 | PHE- 177 | 3.38 | 0 | Hydrophobic |
OAR | NE2 | HIS- 178 | 2.76 | 151.4 | H-Bond (Protein Donor) |
OAP | NE2 | HIS- 178 | 3.22 | 126.73 | H-Bond (Protein Donor) |
CAI | CZ3 | TRP- 221 | 3.23 | 0 | Hydrophobic |
OAQ | MN | MN- 301 | 2.14 | 0 | Metal Acceptor |
OAQ | MN | MN- 302 | 2.4 | 0 | Metal Acceptor |
OAR | MN | MN- 302 | 2.28 | 0 | Metal Acceptor |