1.860 Å
X-ray
2007-05-08
Name: | Beta-lactamase |
---|---|
ID: | AMPC_ECOLI |
AC: | P00811 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 3.5.2.6 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 22.419 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.386 | 570.375 |
% Hydrophobic | % Polar |
---|---|
28.99 | 71.01 |
According to VolSite |
HET Code: | DK2 |
---|---|
Formula: | C18H11NO7 |
Molecular weight: | 353.282 g/mol |
DrugBank ID: | DB07663 |
Buried Surface Area: | 49.35 % |
Polar Surface area: | 137.87 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
23.5069 | 6.61765 | 14.585 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C16 | CD1 | LEU- 119 | 4.47 | 0 | Hydrophobic |
C19 | CD2 | LEU- 119 | 3.8 | 0 | Hydrophobic |
O14 | OH | TYR- 150 | 2.98 | 130.77 | H-Bond (Protein Donor) |
C16 | CE1 | TYR- 150 | 4.11 | 0 | Hydrophobic |
C6 | CG | TYR- 221 | 3.46 | 0 | Hydrophobic |
C16 | CD2 | LEU- 293 | 4.37 | 0 | Hydrophobic |
C22 | CD1 | LEU- 293 | 3.77 | 0 | Hydrophobic |
O15 | N | ALA- 318 | 2.73 | 155.74 | H-Bond (Protein Donor) |
C2 | CB | THR- 319 | 4.36 | 0 | Hydrophobic |
O25 | N | GLY- 320 | 2.77 | 144.88 | H-Bond (Protein Donor) |