scPDB - 2cn8 entry

Protein Data Bank Entry:

PDB ID : 2cn8

Resolution :2.700 Å

Experimental Method : X-ray

Deposition Date : 2006-05-18

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Serine/threonine-protein kinase Chk2
ID:	CHK2_HUMAN
AC:	O96017
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.7.11.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	53.474
Number of residues:	22
Including
Standard Amino Acids:	22
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.274	425.250

% Hydrophobic	% Polar
51.59	48.41
According to VolSite

Ligand :

HET Code:	DBQ
Formula:	C11H12N5O2
Molecular weight:	246.245 g/mol
DrugBank ID:	DB04367
Buried Surface Area:	71.31 %
Polar Surface area:	113.97 Å2

Number of
H-Bond Acceptors:	2
H-Bond Donors:	5
Rings:	3
Aromatic rings:	1
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	0

Mass center Coordinates

X	Y	Z
-12.5521	45.4161	6.98044

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C7	CG1	VAL- 234	3.95	0	Hydrophobic	false
C2	CG1	VAL- 234	3.65	0	Hydrophobic	false
C7	CB	ALA- 247	4.3	0	Hydrophobic	false
N3	NZ	LYS- 249	3.38	153.08	H-Bond (Protein Donor)	false
C7	CD1	LEU- 301	3.6	0	Hydrophobic	false
N2	O	GLU- 302	3.09	163.26	H-Bond (Ligand Donor)	false
O1	N	MET- 304	2.76	159.3	H-Bond (Protein Donor)	false
C2	CG	GLU- 308	4.3	0	Hydrophobic	false
N4	OE1	GLU- 308	2.78	134.69	H-Bond (Ligand Donor)	false
N5	OE1	GLU- 308	2.92	137.82	H-Bond (Ligand Donor)	false
N5	OD1	ASN- 352	2.84	144.23	H-Bond (Ligand Donor)	false
C2	CD1	LEU- 354	4.35	0	Hydrophobic	false
N3	OG1	THR- 367	2.99	122.98	H-Bond (Protein Donor)	false