2.800 Å
X-ray
2004-11-11
Name: | Bifunctional protein PyrR |
---|---|
ID: | PYRR_BACCL |
AC: | P41007 |
Organism: | Bacillus caldolyticus |
Reign: | Bacteria |
TaxID: | 1394 |
EC Number: | 2.4.2.9 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 37.528 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.248 | 340.875 |
% Hydrophobic | % Polar |
---|---|
36.63 | 63.37 |
According to VolSite |
HET Code: | 5GP |
---|---|
Formula: | C10H12N5O8P |
Molecular weight: | 361.205 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.43 % |
Polar Surface area: | 217.22 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
27.3545 | -1.83671 | 12.37 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3P | N | PHE- 108 | 2.64 | 148.21 | H-Bond (Protein Donor) |
O1P | OG1 | THR- 109 | 2.76 | 125.56 | H-Bond (Protein Donor) |
O3P | N | GLY- 110 | 3.12 | 166.68 | H-Bond (Protein Donor) |
O1P | N | THR- 112 | 2.91 | 164.74 | H-Bond (Protein Donor) |
C5' | CB | THR- 112 | 3.36 | 0 | Hydrophobic |
O6 | N | ILE- 161 | 3.2 | 155.55 | H-Bond (Protein Donor) |
N1 | O | ILE- 161 | 2.89 | 123 | H-Bond (Ligand Donor) |
N3 | O | HOH- 323 | 3.38 | 131.59 | H-Bond (Protein Donor) |