1.520 Å
X-ray
2004-10-05
Name: | Methionine aminopeptidase |
---|---|
ID: | MAP1_ECOLI |
AC: | P0AE18 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 12.944 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.250 | 293.625 |
% Hydrophobic | % Polar |
---|---|
49.43 | 50.57 |
According to VolSite |
HET Code: | FCD |
---|---|
Formula: | C11H6ClO3 |
Molecular weight: | 221.617 g/mol |
DrugBank ID: | DB02909 |
Buried Surface Area: | 66.95 % |
Polar Surface area: | 53.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-2.89307 | -1.0122 | 8.65747 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CL2 | CB | CYS- 59 | 4.45 | 0 | Hydrophobic |
CL2 | CD2 | TYR- 62 | 4.09 | 0 | Hydrophobic |
C4 | CB | HIS- 63 | 3.57 | 0 | Hydrophobic |
C5 | CB | TYR- 65 | 4.46 | 0 | Hydrophobic |
CL2 | CG | TYR- 65 | 3.62 | 0 | Hydrophobic |
CL2 | SG | CYS- 70 | 4.19 | 0 | Hydrophobic |
OA | NE2 | HIS- 178 | 3.23 | 130.25 | H-Bond (Protein Donor) |
C5 | CZ3 | TRP- 221 | 3.35 | 0 | Hydrophobic |
OXT | MN | MN- 265 | 2.03 | 0 | Metal Acceptor |
OB | MN | MN- 266 | 2.21 | 0 | Metal Acceptor |
OXT | MN | MN- 266 | 2.29 | 0 | Metal Acceptor |