1.970 Å
X-ray
2004-09-17
Min | Mean | Median | Standard Deviation | Max | Count | |
---|---|---|---|---|---|---|
pChEMBL: | 6.000 | 6.000 | 6.000 | 0.000 | 6.000 | 1 |
Name: | Beta-lactamase |
---|---|
ID: | AMPC_ECOLI |
AC: | P00811 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 3.5.2.6 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 15.019 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.360 | 489.375 |
% Hydrophobic | % Polar |
---|---|
29.66 | 70.34 |
According to VolSite |
HET Code: | HTC |
---|---|
Formula: | C12H6NO7S2 |
Molecular weight: | 340.309 g/mol |
DrugBank ID: | DB07927 |
Buried Surface Area: | 51.76 % |
Polar Surface area: | 185.35 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-1.02291 | 5.1715 | 74.2711 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O23 | OG | SER- 64 | 2.68 | 140.76 | H-Bond (Protein Donor) |
O23 | N | SER- 64 | 2.97 | 145.56 | H-Bond (Protein Donor) |
O17 | NE2 | GLN- 120 | 3.46 | 162.97 | H-Bond (Protein Donor) |
O17 | ND2 | ASN- 152 | 2.65 | 170.29 | H-Bond (Protein Donor) |
S20 | CD2 | LEU- 293 | 4.23 | 0 | Hydrophobic |
N1 | O | ALA- 318 | 2.67 | 120.55 | H-Bond (Ligand Donor) |
O23 | N | ALA- 318 | 2.87 | 160.2 | H-Bond (Protein Donor) |
C4 | CG2 | THR- 319 | 4.36 | 0 | Hydrophobic |
C6 | CB | THR- 319 | 4.48 | 0 | Hydrophobic |