2.500 Å
X-ray
2004-02-09
Name: | Probable butyrate kinase 2 |
---|---|
ID: | BUK2_THEMA |
AC: | Q9X278 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 41.454 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.152 | 648.000 |
% Hydrophobic | % Polar |
---|---|
38.54 | 61.46 |
According to VolSite |
HET Code: | ACP |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB03909 |
Buried Surface Area: | 43.02 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
40.7763 | 21.565 | 21.4102 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3G | NE2 | HIS- 154 | 2.96 | 156.29 | H-Bond (Protein Donor) |
O2G | N | GLY- 185 | 2.86 | 135.86 | H-Bond (Protein Donor) |
O2G | N | GLY- 186 | 3.4 | 151.27 | H-Bond (Protein Donor) |
O3' | O | SER- 254 | 3.41 | 172.79 | H-Bond (Ligand Donor) |
O2' | O | SER- 254 | 2.75 | 131.59 | H-Bond (Ligand Donor) |
O2' | N | ALA- 256 | 2.93 | 165.89 | H-Bond (Protein Donor) |
C1' | CB | ALA- 256 | 4.03 | 0 | Hydrophobic |
O2A | N | GLY- 304 | 3.27 | 156 | H-Bond (Protein Donor) |
C4' | CD2 | LEU- 305 | 3.89 | 0 | Hydrophobic |
C1' | CD2 | LEU- 305 | 3.95 | 0 | Hydrophobic |