2.500 Å
X-ray
2003-08-01
Name: | UPF0166 protein TM_0021 |
---|---|
ID: | Y021_THEMA |
AC: | Q9WXM9 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 38.129 |
---|---|
Number of residues: | 18 |
Including | |
Standard Amino Acids: | 18 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.103 | 313.875 |
% Hydrophobic | % Polar |
---|---|
44.09 | 55.91 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 42.31 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
36.4917 | 6.81648 | 6.05889 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CB | TYR- 7 | 3.69 | 0 | Hydrophobic |
O1B | N | GLY- 45 | 3.01 | 159.28 | H-Bond (Protein Donor) |
O1A | N | GLY- 89 | 3.19 | 155.47 | H-Bond (Protein Donor) |
O2A | N | GLY- 89 | 3.28 | 133.08 | H-Bond (Protein Donor) |