2.100 Å
X-ray
2000-12-08
Name: | Protein UshA |
---|---|
ID: | USHA_ECOLI |
AC: | P07024 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 3.1.3.5 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 54.363 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.941 | 1420.875 |
% Hydrophobic | % Polar |
---|---|
34.68 | 65.32 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 65.37 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
7.94547 | 12.694 | 36.9879 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CD1 | ILE- 178 | 4.19 | 0 | Hydrophobic |
C3' | CB | ILE- 178 | 4.18 | 0 | Hydrophobic |
O5' | NH2 | ARG- 410 | 3.11 | 127.05 | H-Bond (Protein Donor) |
C1' | CZ | PHE- 429 | 4.12 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 429 | 3.47 | 0 | Aromatic Face/Face |
N1 | ND2 | ASN- 431 | 3.24 | 157.38 | H-Bond (Protein Donor) |
C2' | CZ | PHE- 498 | 3.81 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 498 | 3.91 | 0 | Aromatic Face/Face |