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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ho5 ADN Protein UshA 3.1.3.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ho5 ADNProtein UshA 3.1.3.5 0.837
3zu0 A12NAD 5'-nucleotidase 3.1.3.5 0.665
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.662
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.658
2zt7 ATPGlycine--tRNA ligase / 0.657
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.655
4ej7 ATPAminoglycoside 3'-phosphotransferase AphA1-IAB / 0.654
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.653
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.653
1vhz APRADP compounds hydrolase NudE 3.6.1 0.650