sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5mdh | NAD | Malate dehydrogenase, cytoplasmic | 1.1.1.37 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 5mdh | NAD | Malate dehydrogenase, cytoplasmic | 1.1.1.37 | 1.000 | |
| 4nd2 | A3D | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.541 | |
| 4wlu | NAD | Malate dehydrogenase, mitochondrial | 1.1.1.37 | 0.532 | |
| 5a1t | NAI | L-lactate dehydrogenase | / | 0.528 | |
| 1pzf | A3D | Lactate dehydrogenase | / | 0.519 | |
| 2hjr | APR | Malate dehydrogenase, adjacent gene encodes predicted lactate dehydrogenase | / | 0.517 | |
| 1pzg | A3D | Lactate dehydrogenase | / | 0.515 | |
| 1sow | NAD | L-lactate dehydrogenase | 1.1.1.27 | 0.508 | |
| 4wlv | NAD | Malate dehydrogenase, mitochondrial | 1.1.1.37 | 0.508 | |
| 4nd4 | NAD | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.507 | |
| 4ajp | 88N | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.503 | |
| 1t2d | NAD | L-lactate dehydrogenase | 1.1.1.27 | 0.500 | |
| 4ajo | 88N | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.494 | |
| 4wlo | NAI | Malate dehydrogenase, mitochondrial | 1.1.1.37 | 0.488 | |
| 4okn | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.485 | |
| 1ie3 | NAD | Malate dehydrogenase | / | 0.480 | |
| 2fn7 | NAD | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.480 | |
| 1mgo | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.475 | |
| 2vhv | NAI | Alanine dehydrogenase | 1.4.1.1 | 0.469 | |
| 1zem | NAD | Xylitol dehydrogenase | / | 0.467 | |
| 4gkv | NAD | Alcohol dehydrogenase, propanol-preferring | 1.1.1.1 | 0.464 | |
| 4l4s | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.461 | |
| 4dwv | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.460 | |
| 1adb | CND | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.459 | |
| 2jhf | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.457 | |
| 1ma0 | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.453 | |
| 4al4 | W7E | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.452 | |
| 1agn | NAD | Alcohol dehydrogenase class 4 mu/sigma chain | 1.1.1.1 | 0.448 | |
| 3two | NDP | Mannitol dehydrogenase | / | 0.448 | |
| 1e3s | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.447 | |
| 2fze | APR | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.447 | |
| 4nbt | NAD | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.443 | |
| 1r37 | NAD | NAD-dependent alcohol dehydrogenase | 1.1.1.1 | 0.440 | |
| 2vhz | NAI | Alanine dehydrogenase | 1.4.1.1 | 0.440 | |
| 4ng5 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.440 |