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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5kcpNAJAlcohol dehydrogenase E chain1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5kcpNAJAlcohol dehydrogenase E chain1.1.1.11.000
5kcpPFBAlcohol dehydrogenase E chain1.1.1.10.752
5kj6NAJAlcohol dehydrogenase E chain1.1.1.10.711
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.669
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.668
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.653
1hetNADAlcohol dehydrogenase E chain1.1.1.10.651
5kjeNAJAlcohol dehydrogenase E chain1.1.1.10.650
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.642
3oq6NAJAlcohol dehydrogenase E chain1.1.1.10.638
5cdgNAJAlcohol dehydrogenase E chain1.1.1.10.630
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.627
5kj1NAJAlcohol dehydrogenase E chain1.1.1.10.622
5cdtNAJAlcohol dehydrogenase E chain1.1.1.10.621
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.619
1heuNADAlcohol dehydrogenase E chain1.1.1.10.583
1hf3NADAlcohol dehydrogenase E chain1.1.1.10.571
5kjePFBAlcohol dehydrogenase E chain1.1.1.10.549
5kj1PFBAlcohol dehydrogenase E chain1.1.1.10.535
5cdsPFBAlcohol dehydrogenase E chain1.1.1.10.528
1hldNADAlcohol dehydrogenase E chain1.1.1.10.526
5kjcPFBAlcohol dehydrogenase E chain1.1.1.10.525
5cdgPFBAlcohol dehydrogenase E chain1.1.1.10.524
6adhNADAlcohol dehydrogenase E chain1.1.1.10.523
1u3vNADAlcohol dehydrogenase 1B1.1.1.10.518
4nfhPFBAlcohol dehydrogenase E chain1.1.1.10.515
5kj6PFBAlcohol dehydrogenase E chain1.1.1.10.515
5cdtPFBAlcohol dehydrogenase E chain1.1.1.10.514
1agnNADAlcohol dehydrogenase class 4 mu/sigma chain1.1.1.10.512
4ng5PFBAlcohol dehydrogenase E chain1.1.1.10.510
4dxhNAJAlcohol dehydrogenase E chain1.1.1.10.496
3oq6PFBAlcohol dehydrogenase E chain1.1.1.10.495
4dwvPFBAlcohol dehydrogenase E chain1.1.1.10.492
5kjfNAJAlcohol dehydrogenase E chain1.1.1.10.484
1hszNADAlcohol dehydrogenase 1B1.1.1.10.478
4rquNADAlcohol dehydrogenase class-P/0.465
5kczNAJAlcohol dehydrogenase E chain1.1.1.10.457
4nfsNAJAlcohol dehydrogenase E chain1.1.1.10.454
1e3eNAIAlcohol dehydrogenase 41.1.1.10.452
1e3lNADAlcohol dehydrogenase 41.1.1.10.452
1adcPADAlcohol dehydrogenase E chain1.1.1.10.443
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/0.442
3wleNAD(R)-specific carbonyl reductase/0.440
4c4oNADSADH/0.440